_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-45
 Query name: gi|929114772|ref|XP_014068814.1| PREDICTED: glutathione peroxidase 3-like [Salmo salar]
 Query range: 1-229  (total 229)

 Target: /data/www-rg/seblastian_results/493543340/tempfiles/temptarget.fasta
 Chromosome: CM007959.1:subseq_2447231,92796_ Strand: -
 Positions:
 -Exon 1  55217        55306
 -Exon 2  49999        50149
 -Exon 3  48237        48354
 -Exon 4  47084        47183
 -Exon 5  42569        42796

 Redox box: no

Query   MRGMQGSLWVLPLVLLGLLKPWAAGNSLSQ <---Intron---> VCDPSKDGTIYNYKAKTLNGSRSVSLSEYMGKTVLFINVATYUGLTFQYLE <-
        ||||| |/||||||||||||||||| |||| <   5067bp   > |||||/||||||||||||||||||||||||||||||/|||||||||||||| < 
Target  MRGMQESMWVLPLVLLGLLKPWAAGYSLSQ                VCDPSEDGTIYNYKAKTLNGSRSVSLSEYMGKTVLFVNVATYUGLTFQYLE   
        acgacgaatgcccgccgctactgggttcac                gtgctgggaatatagaacagactgtcagtagaagctgaggattgcatctcg   
        tggtaagtgttcttttgttacgccgactga                tgaccaagctaaaacactagggctctgaatgacttttatccaggtctaat    
        ggcgggtggcatgtagggagcgtaccactg                gtcatatcgctccatgagtgttaccctgcgggccccccactcaacccgcg    
                                                                                                *           

Query   --Intron---> LNALHEEMKDYGFTILGFPSNQFGKQEPGDNHEILATLK <---Intron---> HVRPGNGFVPNFLLFQRGDVNGNTEQAVYTFL
          1644bp   > |||||||||||||||||||||||||||||/||||||||| <   1053bp   > ||||||||||||||||||||||/||| |||||
Target               LNALHEEMKDYGFTILGFPSNQFGKQEPGENHEILATLK                HVRPGNGFVPNFLLFQRGDVNGDTEQGVYTFL
                     tagccggaagtgtaacgtctactgacgcggacgacgaca                cgccgagtgcatcctcagggaggagcggtatc
                    atactaaataaagtcttgtccaatgaaacgaaaattccta                atgcgagttcattttaggatagacaagtactt
                    ggtaacggggttgtctcgccctgtaaggaaattgtgcta                gtcaaatattaccgacgggtgcacaaaacctct
                                                                                                            

Query   K <---Intron---> NSCPPVGDSFGNPTNRLFWEPLKINDIKWNFEKFLVGPDGKPVMRWFPRVPVSEVREDILKYFRQLFSQSTQQNID
        | <   4287bp   > |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Target  K                NSCPPVGDSFENPTNRLFWEPLKINDIKWNFEKFLVGPDGKPVMRWFPRVPVSEVREDILKYIRQLFSQSTQQNID
        a                attccgggatgacaaacttgccaaagaatatgatcggcggacgaattccgcgtggcggacatacccttctaccaag
        a                acgcctgagtaaccagttgactataatagataatttgcagacttggtcgtctcatgaattaatgattcaccaaata
        a                cccgaagcctgccccgccggcggccccagctggcgcagtggcggggccgcagtgtggcccacctacccgccggctc
                                                                                                     
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 533 ; UGA-SECIS: 1001

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007959.1:subseq_2447231,92796_ Strand = - Positions = 42035 - 41957
 Found by:  Infernal (score=14.9) Covels (score=15.77)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -12.73

         ..(((((((.......(((((((((((((((................)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(((([((.--....([[(((([{((({(..................)})))}]))))]]).......-...))]))))..
 target  GGUGGCAUGU--UGUAUGAAGGUGAGGCUUGAAAACAGCGCGUCUGUGGUGCCAAACCUGAGUUCUAGG-GUCCAGGCCAGU
                         ****           ^^^                        ****